DNA paired with light could help guide drugs to their targets

UV light-activated aptamers Dan Kohane drug delivery
Short snippets of DNA called aptamers (red) readily get into cancer cells (green and blue) on their own (left panel). They can't penetrate cells when stuck to an oligonucleotide (center), but regain the ability when the oligonucleotide's bonds are broken by UV light (right). (Images courtesy Lele Li, PhD.)

You have a drug. You know what you want it to do and where in the body you need it to go. But when you inject it into a patient, how can you make sure your drug does what you want, where you want, when you want it to?

Daniel Kohane, MD, PhD, who runs the Laboratory of Biomaterials and Drug Delivery at Boston Children’s Hospital, has one potential solution. In the Proceedings of the National Academy of Sciences, Kohane; postdoctoral fellows LeLe Li, PhD, and Rong Tong, PhD; and Robert Langer, PhD, of Massachusetts Institute of Technology, describe a drug- targeting system that’s based on a combination of ultraviolet (UV) light and short, single strands of DNA called aptamers.

Aptamers hold appeal as drug delivery tools—or as drugs themselves—because they’re small size, penetrate tissues rapidly and resist enzymatic breakdown in the bloodstream. They’re readily synthesized, can be tagged onto drugs or other therapeutic molecules and can be designed to stick to specific targets similar to how an antibody would.

Their downside, though, is that they spread easily through the body and tend to accumulate in normal tissues, such as liver and kidneys. Thus, it’s hard to get enough aptamers to the site of the diseased tissue to have a therapeutic effect, and one can get off-target effects.

“DNA and RNA aptamers are very useful, and have been widely used for biomedical applications like sensing, targeted imaging and drug delivery,” says Li. “But to use them for targeted tumor therapy, for instance, we need to improve their targeting efficiency.”

The research team’s solution was to use light. They engineered a complementary short DNA strand, called an oligonucleotide, containing chemical bonds that break in UV light. In the absence of UV, the oligonucleotide and the aptamer stick together, stopping the aptamer from binding to its target.

In the presence of UV, though, the oligonucleotide’s light-sensitive bonds break, snapping it into even smaller DNA pieces that float away, giving the liberated aptamer a chance to bind to its target cells.

“In the rest of the body, the aptamer isn’t activated,” Kohane explains. “You get the specific effect of the aptamer only where you shine the light. Which allows you great spatial and temporal control over where your therapeutic action takes place.”

Making aptamers see the light

The research team tested the approach’s utility in breast cancer cell lines and in a mouse model of breast cancer, using an aptamer targeted to the protein nucleolin, found on the surface of many kinds of cancer cells.

In both systems, the aptamer alone easily bound to nucleolin and penetrated cancerous cells. Adding the oligonucleotide kept the aptamer from binding to its target—until the researchers turned on a UV laser, breaking up the oligonucleotide and freeing the aptamer to bind to nucleolin again.

Daniel Kohane UV light-activated aptamers drug delivery
Daniel Kohane, MD, PhD
The mouse model demonstrated the approach’s power in a live animal: The researchers found they could readily control accumulation of the oligonucleotide-bound aptamers in tumors simply by shining their UV light on the mice. They also noted that the method significantly reduced the amount of aptamer accumulating in the liver and kidneys relative to the tumors.

“There are very few demonstrations of something like this working in vivo,” Kohane says. “It’s the kind of work that brings together two different areas, aptamers and light activation, that don’t ordinarily mix.”

Kohane adds that this method could potentially complement other light-activated drug technologies his lab has developed, like drug-loaded nanoparticles that squeeze out their payload when exposed to UV light, or gold nanoparticles that heat up in near-infrared light to cook diseased cells.

“You could tag aptamers to passive particles, ones that don’t react to light,” he says, “or to particles that are triggered by the same or different wavelengths. Those are some of the kinds of approaches we’re thinking about.”

To learn more about this technology, read the PNAS paper or contact Raj Khunkhun in Boston Children’s Technology and Innovation Development Office.